It can be caused by incorrect gksu settings; to correct the situation:
- execute
gksu-properties
(without any arguments), so the "Privilege granting preferences" dialog window should pop up; - select the correct authentication mode from the drop-down list:
- su, if the system has an active root user with password;
- sudo, if there's no active root user, and the superuser privileges are granted to a normal user through the use of sudo;
- close the settings window;
- finally, try to execute some gksu-dependent stuff to test it.
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